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Northeastern University

Simulating Large Biomolecular Assemblies

Northeastern’s Prof Paul Whitford uses high performance computing to study the dynamics of biological systems to understand the physical principles that govern the dynamics of cells.
The Whitford group develops and applies a broad range of simulation stategies to study complex biomolecular assemblies, such as the ribosome and viruses. By integrating numerous tools, these studies aim to reveal how specific intermolecular interactions give rise to biological dynamics and disease.
https://web.northeastern.edu/whitford/
Paul Whitford
Professor Whitford received his graduate training in the Center for Theoretical Biological Physics at UC San Diego. He was then a Director's Postdoctoral fellow at Los Alamos, where he applied HPC to study biomolecular dynamics. At NU, his group has become well known for their studies of the ribosome and other molecular assemblies.

Consortium

Featured projects

SC23 Project
Computing Social Capital
SC23 Project
Neural Networks & Earthquakes
SC23 Project
NeuraChip
SC23 Project
The Rhode Island Coastal Hazards Analysis, Modeling, and Prediction System
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Energy Transport and Ultrafast Spectroscopy Lab
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URI Center for Computational Research
SC23 Project
UMass - URI Unity Cluster
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Computational Molecular Ecology
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Cyber-Physical Communication Network Security
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Remote Sensing of Earth Systems
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Genome Forecasting
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SC23 Student Cluster Competition
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OSN 1 - Accessing Storage
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Campus Champions
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Harvard FASRC
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SEQer - Sequence Evaluation in Realtime
SC23 Project
ACAS X: A Family of Next-Generation Collision Avoidance Systems
SC23 Project
A Future of Unmanned Aerial Vehicles
Knowledge Base
Climate Health and Air Pollution in India
NASA Arctic-Boreal Vulnerability Experiment (ABoVE)
The Center for Scientific Computing and Data Science Research (CSCDR)
AI Computing and the AI Jumpstart Cluster
AI for Dementia Assessment
Measuring Nationwide Park Access
Quantifying Risk, Resilience, and Uncertainty with Machine Learning and HPC
Refugee Migration and Return on Social Media
Modeling Molecular Dynamics for Drug Delivery
Expanding Computing Education Pathways (ECEP) Alliance
Machine Learning and Wastewater
Candidate Driver Analysis of Multi-omics Data (CaDrA)
OpenCilk
Wearable Health Technology
Deepfake Caricatures
Invisible Tags
ElectroVoxels: Modular Self-reconfigurable Robots
Color Changing Objects
The Mass Open Cloud Alliance (MOC Alliance)
Open Cloud Testbed (OCT)
Ecosystem for Research Networking (ERN)
SC23 Project
OSN 2 - Deploying Storage
ACCESS Support (MATCH)
ConnectCI
Ask.CI
The UMass-URI Gravity Research Consortium (U2GRC)
Billion Object Platform
Predicting Kinetic Solvent Effects
Predicting Reaction Barrier Heights
Aviation Weather Decision Support Laboratory Tour
Sensorimotor Technology Realization in Immersive Virtual Environments (STRIVE)
Conclave Cloud Dataverse: Protected Computing in the Datacenter
Large-Scale Brain Mapping
AI for HPC Analytics
Offshore Precipitation Capability (OPC) System
The Forensic Video Exploitation and Analysis (FOVEA) Tool Suite
Next Generation Aircraft Collision Avoidance System ACAS X
Learning-Task Informed Abstractions
Research Software Engineering
LLSC Articles and Publications
Software for Unreliable Quantum Computers
FlyNet
Simulating Large Biomolecular Assemblies
Lichtman Lab - Center for Brain Science
Black Hole Initiative
Lincoln Laboratory Supercomputing Center (LLSC)
UNIVERSITY PARTNERS
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